Lines like that didn't happen in Ocarina of Time or Wind Waker. They really don't fit in with the way he speaks in those games, and I know I'm not the only one who thinks Ganondorf was kind of shoehorned into Twilight Princess. Either way, sometimes people just say things to mess with whoever they're speaking to.
People aren't evil because of their actions, it's because of their reasons for taking them. Ganondorf did those things to fulfill his goals. Ridley on the other hand is much more evil because he does those kinds of things for pleasure. Sure, Ganondorf is a pretty terrible person for being okay with harming others, and yes he'll enjoy it when he does it, but this is a person who can laugh at his own death. He's not that evil.
Just for fun though, I'll pick apart some of the points on that list:
Lying- Oooh, so evil~
Destruction of sacred realms and locations- "Sacred" is subjective.
Necromany for villainous purposes- Since necromancy isn't evil on its own, you're literally just saying he's being villainous. Which is obvious.
Cruelty to animals- As opposed to... cruelty to plants? "Cruelty" is kind of vague anyway. See the above point on villainy.
Murder, invasion of a peacful kingdom, assault, willful destruction of natural environments- Animals do these things all the time with no malevolent intentions. Humans too, for the last one.
I haven't seen the story of Hyrule Warriors yet and I don't know who wrote it, so I don't know if I'd count that.
There's also no evidence for torture. Because as I said, Ganondorf generally only does what he thinks is required to achieve his goals. Otherwise, he'd be causing way more suffering than what we've seen. So far, the only time he may have canonically gone farther than that is in Wind Waker's backstory, which was probably out of rage. Even in the classics, the random townsfolk were left alone.
tl;dr: Ganondorf is fairly evil, but he's far from a complete monster.