I looked at a Japanese review site for their opinions on the Fire Emblem series, and unsurprisingly their outlook on the FE series is pretty consistent:
FE3 (VC): 71 points (received a letter grade of C though, I guess VC games have a harsher grading system)
FE4 (VC): 75 points (received a letter grade of C though, I guess VC games have a harsher grading system)
FE5 (VC): 82 points (no letter grade due to not enough reviews)
FE6: 78 points (A)
FE7: 78 points (A)
FE8: 65 points (C)
FE9: 73 points (A)
FE10: 75 points (A)
FE11: 60 points (C)
FE12: 75 points (A)
FE13: 70 points (B)
It pretty much matches up with what I said before that the only two FE games I see a lot of hate for in Japan are FE8 and FE11.
*Note all review aggregates for the NES/Famicom, SNES/SFC, and N64 games below are from those rating the Virtual Console versions.
Some other curious things from the website:
Super Metroid: 84 points (B) (pretty much confirms that VC games have a harsher grade scale for a letter grade in regards to points)
Panel de Pon: 76 points (no letter grade due to not enough reviews)
A Link To The Past: 83 points (B)
Majora's Mask: 84 points (no letter grade)
F-Zero X: 75 points (C)
Star Fox 64: 75 points (C)
Ocarina of Time: 81 points (B)
Super Mario 64: 76 points (C)
Super Mario RPG: 68 points (C)
F-Zero: 80 points (B)
Super Mario World: 72 points (C)
Paper Mario: 76 points (C)
Nazo no Murasame: Only one review for it and he gave it 38 points
Super Mario Bros. 3: 87 points (B)
Metroid: Only one review, 72 points
Punch-Out: only two reviews, 75 points
Super Smash Bros.: 72 points (C)
Custom Robo V2: 81 points (B)
Metroid Other M: 55 points (D) (BWAAHAHAHA, the Japanese hated Other M too)
Metroid Prime 2 Wii Version: 76 points (C)
Metroid Prime Wii Version: 83 points (B)
Metroid Prime 3: 80 points (A)
Mother 3: 66 points (C) (I actually heard Mother 3 was pretty divisive in Japan)
Metroid Fusion: 73 points (B)
Metroid Zero Mission: 76 points (B)
Super Smash Bros. Brawl: 74 points (B)
Metroid Prime: 75 points (A)
Metroid Prime 2: 68 points (C)
Resident Evil 4 (GCN): 81 points (S)
Super Smash Bros. Melee: 83 points (S) (Wow, I guess the Japanese have a strong liking to Melee too)
Star Fox Adventures: 52 points (D) (I said before the Japanese hated the post-64 SF games)
Star Fox Assault: 59 points (D) (more hate for post-64 Star Fox)
F-Zero GX: 82 points S (I applaud the Japanese for rating this game so highly)
Star Fox Command: 64 points (C)
Could not find reviews for FE1 and FE2 on the VC.