Yeah, ALL soundtracks, while not necessarily needing 2 loops, should have enough so that an ENTIRE loop is played at least once well before it fades out. The most extreme example of this is the Water Temple in Ocarina of Time. The song loops at around 2:35, yet on the soundtrack (at least the Japanese version), the Water Temple goes for just 1:44 -- i.e. it fades out a whopping 51 seconds before the loop.
Luckily, on the European soundtrack, it goes until 3:03 -- although it does awkwardly start about 3 seconds into the track, which sounds really bad. But, it at least has the full loop, AND a good 25 seconds more. Because of the starting awkwardly, I used the Japanese soundtrack version for a few seconds, then attached the rest of the European version to it.
Just for the record, the European soundtrack has just 30 tracks, yet the Japanese version (and maybe the Japanese version) has 82 or so.
Here's the tracks in the European version, with their lengths compared to the same lengths on the other version, for comparison:
Title Theme = 2:49 European, 1:20 Japanese
Kokiri Forest = 1:51 European, 1:01 Japanese
Shop = 2:12 European, 1:08 Japanese
Legend of Hyrule = 1:59 European, 1:58 Japanese
Hyrule Field Main Theme = 5:17 European, 4:43 Japanese
Kaepora Gaebora = 2:01 European, 1:00 Japanese
Market = 1:41 European, 0:59 Japanese
Shooting Gallery = 1:26 European, 0:39 Japanese
Hyrule Castle Courtyard = 1:29 European, 0:53 Japanese
Zelda's Theme = 1:39 European, 0:49 Japanese
Lon Lon Ranch = 4:02 European, 2:08 Japanese -- the 4:02 version includes the part where Malon is NOT singing.
Kakariko Village = 3:22 European, 1:44 Japanese
Goron City = 2:40 European, 1:38 Japanese
Lost Woods = 1:15 European, 0:39 Japanese
Zora's Domain = 2:52 European, 1:30 Japanese
Great Fairy's Fountain = 1:10 European, 0:35 Japanese
Potion Shop = 1:37 European, 0:52 Japanese
Temple of Time = 2:37 European, 1:19 Japanese
Horse Race = 1:36 European, 0:46 Japanese
Ingo's Theme = 1:28 European, 0:39 Japanese
Kakariko Village Orchestra Version = 2:51 European, 1:44 Japanese
Windmill Hut = 1:37 European, 0:52 Japanese
Forest Temple = 3:07 European, 1:52 Japanese
Fire Temple = 3:37 European, 0:42 Japanese -- the Japanese version doesn't have the 'chanting' in it
Water Temple = 3:03 European, 1:44 Japanese
Shadow Temple = 2:05 European, 1:45 Japanese
Gerudo Valley = 2:51 European, 1:34 Japanese
Spirit Temple = 3:56 European, 2:57 Japanese
Kotake and Koume's Theme = 1:34 European, 0:52 Japanese
End Credits = 3:37 European, 7:08 Japanese -- the European version is much shorter:
Firstly, it starts right when the Lost Woods theme plays. In the Japanese version, there's at least 4:25 left, yet the European version only plays for 3:37, however, the European version ends before the final section of the full credits where Zelda's Lullaby plays, and also has a slightly different ending.
And while I refer to them as Japanese and EU:
The 30-track version is called "The Legend of Zelda: Ocarina of Time Original Soundtrack", and was published by Nintendo of Europe, and released in 1999:
http://vgmdb.net/album/1888
The 82-track version is called "The Legend of Zelda: Ocarina of Time Original Sound Track" and was published by Pony Canyon, and released in Japan, on December 18, 1998 (the actual game came out in Japan a month earlier, and concidentially, it came out in Australia on December 18, 1998):
http://vgmdb.net/album/293
There was also a "Volume II" of the European one, consisting of 20 tracks that weren't in the original soundtrack, and 3 remixes:
http://vgmdb.net/album/6374
Maybe the n00b who tagged it didn't bother to set the timer properly 
-- so I had to use Audacity, and have an overlapping fade-out/fade-in, where the whole thing fades in again, as it fades out, and.... if you don't get what I mean, wait until I've uploaded the BRSTM. You won't even notice. Just for the record, normally, the track would have finished by 2:04, yet it loops at 2:07, so everything from 2:04 onwards is where I overlapped it by a few seconds. Which is also how I usually custom-loop songs. Most people are lazy and just try and find existing loop points, and make ridiculous loops, where it just sounds awful. Listen to my custom loops of Sonic 3D Blast Saturn, and some Call of Duty BRSTMs I've done for example.