Sorry if I came off as a bit aggressive.
You can sit at long distance and charge your thunder tome to try and bait her to use Farore's Wind. Of course, if you fully charge it then you'll have Thoron and she'll have to choose between three options, Farore's Wind, pre-emptively using Neutral B, and approaching you to take stage control. You can react appropriately from that position.
As for short hop LFairs and aerials, simply land and wait to see her option of choice. An aggresive option (dash attack or grab) can be beaten by attacking, you can wait out Farore's Wind, and you can get a defensive reaction to your short hop approaches for potential reads and conditioning later on.
I haven't played against any skilled Zeldas like you have, but I've had my fair share of problematic match ups like Link and Toon Link, (at the tournament level) and I've overcome Link but Toon Link is still one of my issues. I hope I helped out with Zelda at least a little bit.