Alright, just finished watching the video. I'm not too keen on continuing where Zero left off, but if they went with most of his ideas, I certainly wouldn't mind. He brings up great ideas to keep the game from being too linear, where every minor action you do can effect how things pan out while still keeping 64-esque simplicity. I like the idea of bringing Miyu and Fay into the series, although I'm not a fan of leaving Krystal behind. Granted, his idea for the game would take place between Zero and the time Adventures would take place, so it could work. One thing he mentioned that I disagree with, and Command did this too, was where each character had their own unique ship. I'm a fan of uniformity, so I would definitely prefer everyone's ships at least look the same. Different bonuses depending on which character you play as, I'd accept.
The relationship between the Star Fox and Star Wolf teams developing overtime is also something I quite like. If they were to go with Ending 1 from Command, I could see Star Wolf still picking up jobs too morally questionable for Star Fox, while keeping themselves below radar to avoid a significant bounty on their heads again. Smuggling, bounty hunting, etc.