Ummm... I'm a bit confused by your questions, but hopefully I can clarify things. Individual team points are earned regardless of who your partner is. At each event, seeding is based on the sum of the points you and your current partner have accumulated throughout the season.
A team "unit" earns points at every event it is present at, and these points never go away this season. This is NOT used for seeding, but instead is what is used to determine the end-of-season bonus winners. The bonus will be present to the highest-ranking TEAM, not the highest-ranking INDIVIDUAL TEAM PLAYER; note the difference.
So Big C, if Eddie can't team with you at COKII and you team with someone else, you will not be seeded with zero points. Your team will be seeded based on your FRI2 points (plus your partner's FRI2 points if he was there). You will earn more individual team player points for your performance at COKII, but it won't affect your team unit with Eddie in any way, good or bad.
So, essentially, you're helping your team with Eddie out by showing up to COKII and earning more individual points. This will help your seeding at SMYM6, but it won't directly help your efforts in earning the Team Bonus.
Sorry for my long-windedness. Does that help, or did I just confuse you more? Also, wanna team at COKII if Prime bails? ^_^