Current results, and notes:
Latest update:
Each companies' top 6 so far
Nintendo

(21)

(18)

(16)

(12)

(12)

(7)
SEGA

(19), NiGHTS(14), AiAi(8), Billy Hatcher(8), Bayonetta(8), Alex Kidd(7)
Capcom

(20),

(15)<Damn you people*, Amaterasu(13), Dante(10), Phoenix Wright(9), Viewtiful Joe(8)
Namco

(18), Klonoa(15), Lloyd Irving(12), KOS-MOS(10), *Heihachi(10)<Goddammit people,*TIE* Nightmare(9), Taizo Hori(9)
Konami
*Top vote getter!*>Bomberman!(22),

(19), Simon Belmont(18), Goemon(14), Frogger!(9), *Bill Rizer(7)<See above
Square-Enix
Sora(14), Crono(14), Cloud(12), Agnes(11), *TIE* Neku(7), Lara Croft(7), Vivi/Black Mage(7)
Ubisoft
(19), Ezio(13), Jade(11), the Prince(11), Sam Fisher(7), *TIE* Rabbid(6), Aurora(6)
Indies
Shantae(9), Quote(8), Shovel Knight(7), Commander Video(5), *TIE* Reimu Hakurei(3), Alien Hominid(3), Gunvolt(3)
Alt system rosters
Playstation
Ratchet and Clank(12), Kratos(8), Jak & Daxter(7), Sly Cooper(7)<NOT ACCEPTABLE GUYS! MOAR SUPPORT!, *TIE* Parappa(6), *Nathan Drake(6)<You guys disappoint me, *Crash Bandicoot(6)
Xbox
Banjo and Kazooie(13), Master Chief(12), Conker(11), *Steve(6)<Really?, Marcus Fenix(6), Joanna Dark(6)
Notes:
-KOS-MOS broke into the top 6 in a big way. She's been one of the most requested characters recently I'm happy to say.
-Pleasantly surprised to say that Bomberman is the only character up to this point, that has been voted for by everyone that has A)voted for Konami characters, and B) doesn't have a gimmick list. Honestly I didn't see that coming.
-Decided to count Spyro and Crash votes for Playstation. Crash has technically made the cut.
-Some characters right on the cusp of making the cut are Captain Falcon (Nintendo), Akira Yuki (SEGA), Strider (Capcom), and Slime (Square Enix). There are most likely more, but I don't feel like doing a full recount.
-Seeing that this thread is pretty dead right now, this may fall upon deaf ears, but I won't be doing anymore counts. It's a long process, and not too fun. Hopefully, if this thread sees a revival somehow, someone else will take over, but I'm done. 'Twas a fun thread, hope you guys enjoyed it, and hopefully you all will continue to enjoy it.