I think with a stage list that small, two bans is too many, as you'll end up with practically nothing to give yourself an advantage for your character on (which, admittedly, is the -point- of that ruleset). Even if Delphino is your counterpick, you need -3- counterpick stages to be guarenteed to get to pick one since each player gets to ban two stages. As a Ganon you'll likely be banning Frigate Orpheon every match to avoid the lipless edge. Delphino will get banned against you every set as well. This leaves us with 9 stages to play on, and this is only considering each person uses one of their bans. In actuallity we only have 8 stages for the second game as this ruleset incorporates Dave's Stupid Rule (technically we -could- pick the first stage again if we lost on it, but why would we want to?).
Hypothetically let us assume we are in the stage striking process and Lylat is neutral and we are Ganon vs. Meta Knight (lol).
1.We ban Lylat Cruise.
2. Arbitarily bans the only stage he can't fly under (Yoshi's Island)
3. We ban Battlefield (Platforms that close to the ground can set us up for traps against Meta)
4. Meta bans Smashville
5. We play on FD.
I don't know about you but I highly dislike the odds of playing against Meta on FD. Let us also assume that since we both know each other's character and have banned stages, that the banned stages by Meta are: Delphino, and Castle Siege. Our bans are Frigate Orpheon and Lylat Cruise (at least, that's what I would pick). What stage would we pick as counterpick? This is really hard as all the remaining Counterpick stages are Meta ****** grounds. The only one that doesn't seem to be extremely in his favor here is Brinstar, which can actually save him from our spike with lava.
All that said, it's just a hypothetical situation and I doubt Unbreon went out of his way to hate on Ganon and love MK considering he mains Ike. Also, Wobby, Ganoncide doesn't auto lose unless you did it on your last stock. If you are a stock up you still win by Unbreon's ruleset. Suicide moves only make you auto-lose if you are both on the last stock and you would go to Sudden Death.