I've beaten SSE and now I'm going back to get 100% on it. I'm at 98% right now with just a few levels left with flags. However, something seems to be bugged with my game. I did the swamp and the second bomb factory and I know I got all the orange boxes in those areas, yet they're still flagged on the map. I've checked the orange cube locations with FAQ's and I've gotten them all in both of those levels. Has this happened to anyone else? What should I do?
Edit: These are my last two levels that aren't complete now and I'm stuck at 99%. Is there something else I could have missed besides orange cubes such as a trophy or something?
Edit 2: I found what I was missing in the swamp. I didn't realize that in one of the side rooms there was a block you could blow up that was underwater. That removed the blocks that were in the way of a trophy.
Edit: These are my last two levels that aren't complete now and I'm stuck at 99%. Is there something else I could have missed besides orange cubes such as a trophy or something?
Edit 2: I found what I was missing in the swamp. I didn't realize that in one of the side rooms there was a block you could blow up that was underwater. That removed the blocks that were in the way of a trophy.